Pooja Gupta's repositories
wastewater-covidseq
Wastewater sequencing data analysis
aws-iot-device-sdk-cpp
SDK for connecting to AWS IoT from a device using C++
aws-iot-device-sdk-embedded-C
SDK for connecting to AWS IoT from a device using embedded C.
C-WAP
SC2 variant detection and composition pipeline
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
GRFP
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
illumiprocessor
pre-process illumina reads
Phase_hybrid_from_next_gen
Have you got a hybrid in your ultra-conserved element dataset, and you want to confirm its parent species? Then boy, do I have the pipeline for you!
postdoc_funding
A non-exhaustive list of postdoctoral funding opportunities.
Freyja
Depth-weighted De-Mixing
github-slideshow
A robot powered training repository :robot:
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
pango-designation
Repository for suggesting new lineages that should be added to the current scheme
pango_aliasor
Utility to alias and dealias pango lineages
phd
A list of resources on how/why to do a PhD
phyluce
software for UCE (and general) phylogenomics
pigx_sarscov2_ww
PiGx SARS-CoV2 wastewater sequencing pipeline
sarscov2barcode
Assign clades to SarsCov2 samples
statements
Successful Job Applications and Grants
swga
Select primer sets for selective whole genome amplification (SWGA)
tldr
📚 Collaborative cheatsheets for console commands
Wastewater_viral_enrichment
Viral metagenomics of wastewater samples