poncey

decoupler-py

Python package to perform enrichment analysis from omics data.

biolord

altair

Declarative statistical visualization library for Python

spin

SPatial INtegration of spatially resolved transcriptomics datasets

wenyan

文言文編程語言 A programming language for the ancient Chinese.

sage

For calculating global feature importance using Shapley values.

mgwr

Multiscale Geographically Weighted Regression (MGWR)

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

scCustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

pySpatialMetabolomics

python tools for spatial metabolomics analysis

ZmanR

Time-resolved single-cell transcriptomics (Zman-seq)

julia

The Julia Programming Language

mistyR

Multiview Intercellular SpaTial modeling framework

mlx-examples

Examples in the MLX framework

mlx

MLX: An array framework for Apple silicon

NeuralOptimalTransport

PyTorch implementation of "Neural Optimal Transport" (ICLR 2023 Spotlight)

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

omicverse

A python library for multi omics included bulk and single cell RNA-seq analysis.

awesome-AI-for-time-series-papers

A professional list of Papers, Tutorials, and Surveys on AI for Time Series in top AI conferences and journals.

time-series-transformers-review

A professionally curated list of awesome resources (paper, code, data, etc.) on transformers in time series.

personal-site

My personal website - built with React, React-Router, React-Snap for Static-Export, and GitHub Pages.

react-my-website

基于React的个人网站前端代码

LightGlue

LightGlue: Local Feature Matching at Light Speed (ICCV 2023)

ggGenshin

Genshin palettes for ggplot2 and Matplotlib

Xenium_benchmarking

Code used to benchmark Xenium

Spatial_epigenome-transcriptome_co-sequencing

reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

CL4PHI

improved-diffusion

Release for Improved Denoising Diffusion Probabilistic Models