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pombo-lab

pombo-lab

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gamtools

Processing, quality control and analysis of GAM datsets

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Meltron

a statistical framework to detect differences in chromatin contact density at genomic regions of interest

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WinickNg_Kukalev_Harabula_Nature_2021

Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

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multiplex-gam-2023

Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

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GAM_trans_cis_ratio

Calculation of trans-cis NPMI ratios from GAM data

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gamtools-guix

Guix channel definition for gamtools

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3DOmics

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4DN_JAWG_H1

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MELTRONIC

Detection of chromatin melting and condensation events in regions of interest from GAM data

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