Juan Antonio Rodríguez's repositories
BGI-Hi-C-Computational-Analysis
Scripts to analyze BGI HiC data and produce contact maps
Caribou-Bone-Degradation
Set of scripts and data to analyse the genomic and metagenomic data from the Høier-Eriksen et al., 2024 paper
DeepCOMBI
DeepCOMBI is a NN algorithm that exploits SNP relationships in GWAS datasets.
Language:Jupyter Notebook000
gwas-power
R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single-SNP single-trait) GWAS studies using linear regression models, i.e for quantitative traits.
Language:RMIT000
holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
Language:PythonGPL-3.0000
Local-Moran-Index-1D
Scripts to calculate the Local-Moran-Index in 1D from any GWAS summary statistics
pollicipes
Config files for my GitHub profile.
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