Beast code in Giters

Po-E Li's repositories

EpiCoV_downloader

Download all EpiCoV sequcnes from GISAID

Language:PythonGPL-3.030 2 7

GOTTCHA

More details and updates can be found in our homepage and LANL-Bioinformatics Github site (https://github.com/LANL-Bioinformatics/GOTTCHA). Please visit our homepage at

Language:PerlGPL-3.08 7 7

GOTTCHA2

Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2 BETA

Language:PythonNOASSERTION8 3 6

PanGIA

PanGIA (Pan-Genomics for Infectious Agents)

Language:PythonNOASSERTION2 2 1

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT010

CALDERA

Ultra-fast, Bloom filter-based sequence search

Language:C++NOASSERTION000

cov_tracker

EDGE COVID19 variant tracking

Language:HTMLGPL-3.001 1

CSIS

Code Safety Inspection Service

MIT000

dash-oil-and-gas-demo

Dash Demo App - New York Oil and Gas

Language:Python000

dash_template

Python Dash data visualization template

Language:Python000

detaxa

A flexible, adaptable, and well-defined python package for taxonomy and accession number lookup.

Language:PythonGPL-3.0010

Freyja

Depth-weighted De-Mixing

BSD-2-Clause000

metaRBA

This is a repo for the workflow of NMDC Read-based Analysis

010

miccr

MInimap2 Contig ClassifieR

Language:PythonNOASSERTION010

PanGIA-1

Language:PythonNOASSERTION000

phyd3

This is a fork of the original phyd3 for LANL COVID19 assay validation.

Language:JavaScriptGPL-3.0000

ReadbasedAnalysis

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sra_tracker

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sra_tracker_covid19

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variant_viz

Repo for SARS-CoV-2 visualization

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WorkflowPlanning

This is primarily a repo for capturing policies and discussions around the different workflows for NMDC. This is also used for project management related pieces.

Language:Shell000