po1line / Analytics-on-research-of-pharmaceuticals-entry-in-soils

💊 Analytics: trends of studying of pharmaceuticals and personal care products in soil matrix

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Pharmaceuticals in soils research

Objective

Here is the analytics of the research dedicated to pharmaceuticals' impact on natural environments with a focus on soils.

The problem of contamination of the environment by pharmaceuticals and products of personal care and hygiene (PPCP) is globally well recognised nowadays due to the rising emergence of antimicrobial resistance. The largest part of pharmaceuticals entering natural media affects water resources at first, so most of the research is focused on the effects accompanying the pollution of water ecosystems. Another serious aspect of this problem is the introduction of PPCP into soils -- the largest pool of the global biodiversity, one of the major regulators of the global carbon and nutrient cycle, and the source of natural pharmaceuticals. Research dedicated to soils is not so often compared to water research. However, it is a valuable knowledge direction for a better understanding of shifts in the biosphere caused by different pollutants along with the development of regulatory actions required by global urgency.

This analysis is a part of the systematic review "Pharmaceuticals and personal care products reshaping soil ecosystem functioning" prepared for the Environmental Science and Pollution Research journal.

The approach with the provided code example and results can be used for further state-of-the-art analysis on the topic.

Problem statement

The analytics answers the following questions:

  1. What PPCP analytes are currently studied the most?
  2. What are the main therapeutic groups that received most of the attention in the existing research?
  3. Which publications drew most of the attention considering specific PPCP and year of publication?

Information sources

The analysis is made on the openly distributed data relevant to the topic. The core information source is the sample of peer-reviewed scientific papers, selected by the keywords soil and pharmaceuticals occurred in titles and abstracts. The information on these publications, including titles and abstracts texts, were obtained from the Dimensions scientific database https://www.dimensions.ai for years from 2000 to 2022 (attached in the data folder), consisting of 2951 entries. To answer the questions above, the abstract texts were compared with entries from the database of Pharmaceuticals in the environment https://www.umweltbundesamt.de/en/database-pharmaceuticals-in-the-environment-0 of German Environment Agency -- Umwelt Bundesamt (UBA). After the exclusion of papers without mentions of PPCP from the UBA list in the abstract and manual cleaning of papers describing irrelevant environmental matrix 828 abstract entries were used for the final analysis.

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Results

The resulting sample kept ~30% of initial entries which is equal to 828 abstracts containing mentions of 337 unique PPCPs. For the main part of the analysis, unique PPCPs were sorted according to the frequency of their mentions in papers. A list of PPCPs which were mentioned in the abstracts of more than 10 papers was selected.

Trends in pharmaceuticals-in-soils research



There is should be a plot with publishing dynamics

Representation of therapeutic groups in soil research



plot

The most frequently studied PPCP analytes starting from 2017



plot

Recently (starting from 2017) published papers on the topic, drew most of the attention, and provided for top-15 most studied PPCP analytes (on Sept.2022)

Title RefNum Journal PubYear Times cited Pharmaceuticals By PPCP
Composted biosolids and treated wastewater as sources of pharmaceuticals and personal care products for plant uptake: a case study with carbamazepine 0 environmental pollution 2017 78 ['carbamazepine'] carbamazepine
Diclofenac, carbamazepine and triclocarban biodegradation in agricultural soils and the microorganisms and metabolic pathways affected 1 the science of the total environment 2018 64 ['carbamazepine', 'diclofenac', 'triclocarban'] carbamazepine
Uptake and accumulation of emerging contaminants in soil and plant treated with wastewater under real-world environmental conditions in the Al Hayer area (Saudi Arabia) 2 the science of the total environment 2018 58 ['atenolol', 'caffeine', 'carbamazepine', 'diazinon', 'gemfibrozil', 'ibuprofen', 'naproxen'] carbamazepine
Sorption and degradation of contaminants of emerging concern in soils under aerobic and anaerobic conditions 3 the science of the total environment 2019 53 ['carbamazepine', 'chlorothiazide', 'diclofenac', 'gemfibrozil', 'hydrochlorothiazide', 'ibuprofen', 'nadolol', 'sulfamethizole', 'sulfamethoxazole'] carbamazepine
Impacts of irrigation water sources and geochemical conditions on the vertical distribution of pharmaceutical and personal care products (ppcps) in the vadose zone soils 4 the science of the total environment 2018 51 ['caffeine', 'carbamazepine'] carbamazepine
Uptake and accumulation of emerging contaminants in soil and plant treated with wastewater under real-world environmental conditions in the Al Hayer area (Saudi Arabia) 2 the science of the total environment 2018 58 ['atenolol', 'caffeine', 'carbamazepine', 'diazinon', 'gemfibrozil', 'ibuprofen', 'naproxen'] ibuprofen
Sorption and desorption of selected non-steroidal anti-inflammatory drugs in an agricultural loam-textured soil 5 chemosphere 2017 55 ['diclofenac', 'ibuprofen', 'ketoprofen', 'naproxen'] ibuprofen
Multi-residue determination of 47 organic compounds in water, soil, sediment and fish‚ Turia river as case study 6 journal of pharmaceutical and biomedical analysis 2017 53 ['ibuprofen', 'metoprolol', 'paracetamol', 'sulfamethoxazole', 'vildagliptin'] ibuprofen
Sorption and degradation of contaminants of emerging concern in soils under aerobic and anaerobic conditions 3 the science of the total environment 2019 53 ['carbamazepine', 'chlorothiazide', 'diclofenac', 'gemfibrozil', 'hydrochlorothiazide', 'ibuprofen', 'nadolol', 'sulfamethizole', 'sulfamethoxazole'] ibuprofen
Fate and impacts of pharmaceuticals and personal care products after repeated applications of organic waste products in long-term field experiments 7 the science of the total environment 2017 49 ['carbamazepine', 'diclofenac', 'doxycycline', 'ibuprofen', 'triclosan'] ibuprofen
Monitoring the occurrence of pharmaceuticals in soils irrigated with reclaimed wastewater 8 environmental pollution 2018 108 ['chlorothiazide', 'diclofenac', 'hydrochlorothiazide'] diclofenac
Pharmaceuticals, pesticides, personal care products and microplastics contamination assessment of Al-Hassa irrigation network (Saudi Arabia) and its shallow lakes 9 the science of the total environment 2019 75 ['atorvastatin', 'caffeine', 'diazinon', 'diclofenac', 'lorazepam', 'metformin', 'ofloxacin', 'paracetamol', 'salicylic acid', 'tramadol'] diclofenac
Diclofenac, carbamazepine and triclocarban biodegradation in agricultural soils and the microorganisms and metabolic pathways affected 1 the science of the total environment 2018 64 ['carbamazepine', 'diclofenac', 'triclocarban'] diclofenac
Sorption and desorption of selected non-steroidal anti-inflammatory drugs in an agricultural loam-textured soil 5 chemosphere 2017 55 ['diclofenac', 'ibuprofen', 'ketoprofen', 'naproxen'] diclofenac
Sorption and degradation of contaminants of emerging concern in soils under aerobic and anaerobic conditions 3 the science of the total environment 2019 53 ['carbamazepine', 'chlorothiazide', 'diclofenac', 'gemfibrozil', 'hydrochlorothiazide', 'ibuprofen', 'nadolol', 'sulfamethizole', 'sulfamethoxazole'] diclofenac
Enhanced adsorption of bisphenol a and sulfamethoxazole by a novel magnetic CuZnFe2O4–biochar composite 10 bioresource technology 2019 127 ['sulfamethoxazole'] sulfamethoxazole
Sorption and degradation of contaminants of emerging concern in soils under aerobic and anaerobic conditions 3 the science of the total environment 2019 53 ['carbamazepine', 'chlorothiazide', 'diclofenac', 'gemfibrozil', 'hydrochlorothiazide', 'ibuprofen', 'nadolol', 'sulfamethizole', 'sulfamethoxazole'] sulfamethoxazole
Multi-residue determination of 47 organic compounds in water, soil, sediment and fish‚ Turia river as case study 6 journal of pharmaceutical and biomedical analysis 2017 53 ['ibuprofen', 'metoprolol', 'paracetamol', 'sulfamethoxazole', 'vildagliptin'] sulfamethoxazole
Effects of 18 pharmaceuticals on the physiological diversity of edaphic microorganisms 11 the science of the total environment 2017 44 ['nadolol', 'sulfamethoxazole', 'tetracycline', 'trimethoprim'] sulfamethoxazole
Occurrence and human health risk assessment of pharmaceuticals and personal care products in real agricultural systems with long-term reclaimed wastewater irrigation in Beijing, China 12 ecotoxicology and environmental safety 2019 41 ['sulfamethazine', 'sulfamethoxazole', 'sulfisoxazole', 'triclosan', 'trimethoprim'] sulfamethoxazole
A review of the occurrence of selected micropollutants and microorganisms in different raw and treated manure ‚ environmental risk due to antibiotics after application to soil 13 the science of the total environment 2019 66 ['chlortetracycline', 'enrofloxacin', 'ofloxacin', 'oxytetracycline', 'sulfamethazine', 'tetracycline'] tetracycline
Veterinary pharmaceuticals and antibiotics in manure and slurry and their fate in amended agricultural soils: findings from an experimental field site (Baix Empordà, NE Catalonia) 14 the science of the total environment 2018 59 ['enrofloxacin', 'ofloxacin', 'tetracycline'] tetracycline
Novel antibiotic resistance determinants from agricultural soil exposed to antibiotics widely used in human medicine and animal farming 15 applied and environmental microbiology 2017 50 ['chlortetracycline', 'sulfamethazine', 'tetracycline', 'tylosin'] tetracycline
Effects of 18 pharmaceuticals on the physiological diversity of edaphic microorganisms 11 the science of the total environment 2017 44 ['nadolol', 'sulfamethoxazole', 'tetracycline', 'trimethoprim'] tetracycline
Impact of chlortetracycline and sulfapyridine antibiotics on soil enzyme activities 16 international agrophysics 2017 34 ['chlortetracycline', 'sulfapyridine', 'tetracycline'] tetracycline
Fate and impacts of pharmaceuticals and personal care products after repeated applications of organic waste products in long-term field experiments 7 the science of the total environment 2017 49 ['carbamazepine', 'diclofenac', 'doxycycline', 'ibuprofen', 'triclosan'] triclosan
Carbamazepine, triclocarban and triclosan biodegradation and the phylotypes and functional genes associated with xenobiotic degradation in four agricultural soils 17 the science of the total environment 2018 44 ['carbamazepine', 'triclocarban', 'triclosan'] triclosan
Occurrence and human health risk assessment of pharmaceuticals and personal care products in real agricultural systems with long-term reclaimed wastewater irrigation in Beijing, China 12 ecotoxicology and environmental safety 2019 41 ['sulfamethazine', 'sulfamethoxazole', 'sulfisoxazole', 'triclosan', 'trimethoprim'] triclosan
Impact of inoculum sources on biotransformation of pharmaceuticals and personal care products 18 water research 2017 35 ['diclofenac', 'gabapentin', 'gemfibrozil', 'ibuprofen', 'triclosan'] triclosan
Innovative application of biobed bioremediation systems to remove emerging contaminants: adsorption, degradation and bioaccesibility 19 the science of the total environment 2018 29 ['diclofenac', 'ibuprofen', 'triclosan'] triclosan
Pharmaceuticals, pesticides, personal care products and microplastics contamination assessment of al-hassa irrigation network (saudi arabia) and its shallow lakes 9 the science of the total environment 2019 75 ['atorvastatin', 'caffeine', 'diazinon', 'diclofenac', 'lorazepam', 'metformin', 'ofloxacin', 'paracetamol', 'salicylic acid', 'tramadol'] ofloxacin
A review of the occurrence of selected micropollutants and microorganisms in different raw and treated manure environmental risk due to antibiotics after application to soil 13 the science of the total environment 2019 66 ['chlortetracycline', 'enrofloxacin', 'ofloxacin', 'oxytetracycline', 'sulfamethazine', 'tetracycline'] ofloxacin
Veterinary pharmaceuticals and antibiotics in manure and slurry and their fate in amended agricultural soils: findings from an experimental field site (Baix Empordà, NE catalonia) 14 the science of the total environment 2018 59 ['enrofloxacin', 'ofloxacin', 'tetracycline'] ofloxacin
Natural soil mediated photo fenton-like processes in treatment of pharmaceuticals: batch and continuous approach 20 chemosphere 2017 28 ['ofloxacin', 'ornidazole'] ofloxacin
Pharmaceuticals and trace metals in the surface water used for crop irrigation: risk to health or natural attenuation? 21 the science of the total environment 2019 27 ['acetaminophen', 'carbamazepine', 'ciprofloxacin', 'ibuprofen', 'ofloxacin'] ofloxacin
Uptake and accumulation of emerging contaminants in soil and plant treated with wastewater under real-world environmental conditions in the Al Hayer area (Saudi Arabia) 2 the science of the total environment 2018 58 ['atenolol', 'caffeine', 'carbamazepine', 'diazinon', 'gemfibrozil', 'ibuprofen', 'naproxen'] naproxen
Sorption and desorption of selected non-steroidal anti-inflammatory drugs in an agricultural loam-textured soil 5 chemosphere 2017 55 ['diclofenac', 'ibuprofen', 'ketoprofen', 'naproxen'] naproxen
Spatial distribution of pharmaceuticals in conventional wastewater treatment plant with sludge treatment reed beds technology 22 the science of the total environment 2018 39 ['diclofenac', 'flurbiprofen', 'ibuprofen', 'naproxen', 'paracetamol'] naproxen
A review of selected microcontaminants and microorganisms in land runoff and tile drainage in treated sludge-amended soils 23 the science of the total environment 2018 21 ['acetaminophen', 'carbamazepine', 'gemfibrozil', 'ibuprofen', 'naproxen', 'sulfamethoxazole', 'triclocarban', 'triclosan'] naproxen
Mobility of pharmaceutical and personal care products in lime amended wastewater biosolids 24 the science of the total environment 2017 19 ['carbamazepine', 'erythromycin', 'fluoxetine', 'gemfibrozil', 'naproxen', 'triclosan'] naproxen
Pharmaceuticals, pesticides, personal care products and microplastics contamination assessment of Al-Hassa irrigation network (Saudi Arabia) and its shallow lakes 9 the science of the total environment 2019 75 ['atorvastatin', 'caffeine', 'diazinon', 'diclofenac', 'lorazepam', 'metformin', 'ofloxacin', 'paracetamol', 'salicylic acid', 'tramadol'] paracetamol
Multi-residue determination of 47 organic compounds in water, soil, sediment and fish‚ Turia river as case study 6 journal of pharmaceutical and biomedical analysis 2017 53 ['ibuprofen', 'metoprolol', 'paracetamol', 'sulfamethoxazole', 'vildagliptin'] paracetamol
Spatial distribution of pharmaceuticals in conventional wastewater treatment plant with sludge treatment reed beds technology 22 the science of the total environment 2018 39 ['diclofenac', 'flurbiprofen', 'ibuprofen', 'naproxen', 'paracetamol'] paracetamol
Individual and mixture toxicity evaluation of three pharmaceuticals to the germination and growth of Lactuca Sativa seeds 25 the science of the total environment 2019 33 ['amoxicillin', 'ibuprofen', 'paracetamol'] paracetamol
Uptake and toxicological effects of pharmaceutical active compounds on maize 26 agriculture ecosystems & environment 2018 24 ['paracetamol'] paracetamol
Pharmaceuticals and trace metals in the surface water used for crop irrigation: risk to health or natural attenuation? 21 the science of the total environment 2019 27 ['acetaminophen', 'carbamazepine', 'ciprofloxacin', 'ibuprofen', 'ofloxacin'] ciprofloxacin
Occurrence of pharmaceuticals and their metabolites in sewage sludge and soil: a review on their distribution and environmental risk assessment 27 trends in environmental analytical chemistry 2021 27 ['ciprofloxacin', 'estradiol', 'ofloxacin', 'triclocarban', 'triclosan'] ciprofloxacin
Pharmaceuticals, herbicides, and disinfectants in agricultural water sources 28 environmental research 2019 25 ['azithromycin', 'caffeine', 'ciprofloxacin', 'ofloxacin', 'sulfamethoxazole'] ciprofloxacin
Occurrence, fate and environmental risk assessment of pharmaceutical compounds in soils amended with organic wastes 29 geoderma 2020 21 ['carbamazepine', 'ciprofloxacin', 'diclofenac', 'norfloxacin', 'ofloxacin', 'sulfadiazine', 'sulfamethoxazole', 'sulfamethoxypyridazine', 'trimethoprim', 'tylosin'] ciprofloxacin
Comparative study on degradation of norfloxacin and ciprofloxacin by Ganoderma lucidum JAPC1 30 korean journal of chemical engineering 2017 19 ['ciprofloxacin', 'norfloxacin', 'ofloxacin'] ciprofloxacin
Pharmaceuticals, pesticides, personal care products and microplastics contamination assessment of Al-Hassa irrigation network (Saudi Arabia) and its shallow lakes 9 the science of the total environment 2019 75 ['atorvastatin', 'caffeine', 'diazinon', 'diclofenac', 'lorazepam', 'metformin', 'ofloxacin', 'paracetamol', 'salicylic acid', 'tramadol'] caffeine
Uptake and accumulation of emerging contaminants in soil and plant treated with wastewater under real-world environmental conditions in the Al Hayer area (Saudi Arabia) 2 the science of the total environment 2018 58 ['atenolol', 'caffeine', 'carbamazepine', 'diazinon', 'gemfibrozil', 'ibuprofen', 'naproxen'] caffeine
Impacts of irrigation water sources and geochemical conditions on vertical distribution of pharmaceutical and personal care products (PPCPs) in the vadose zone soils 4 the science of the total environment 2018 51 ['caffeine', 'carbamazepine'] caffeine
Occurrence, fate, persistence and remediation of caffeine: a review 31 environmental science and pollution research 2019 47 ['caffeine'] caffeine
Pharmaceuticals and personal care products in a mediterranean coastal wetland: impact of anthropogenic and spatial factors and environmental risk assessment 32 environmental pollution 2020 33 ['caffeine', 'diclofenac', 'furosemide', 'ibuprofen', 'metformin', 'salicylic acid', 'tramadol'] caffeine
Effects of 18 pharmaceuticals on the physiological diversity of edaphic microorganisms 11 the science of the total environment 2017 44 ['nadolol', 'sulfamethoxazole', 'tetracycline', 'trimethoprim'] trimethoprim
Occurrence and human health risk assessment of pharmaceuticals and personal care products in real agricultural systems with long-term reclaimed wastewater irrigation in Beijing, China 12 ecotoxicology and environmental safety 2019 41 ['sulfamethazine', 'sulfamethoxazole', 'sulfisoxazole', 'triclosan', 'trimethoprim'] trimethoprim
Uptake and bioaccumulation of three widely prescribed pharmaceutically active compounds in tomato fruits and mediated effects on fruit quality attributes 33 the science of the total environment 2018 25 ['diclofenac', 'sulfamethoxazole', 'trimethoprim'] trimethoprim
Uptake and accumulation of pharmaceuticals in overhead- and surface-irrigated greenhouse lettuce 34 journal of agricultural and food chemistry 2018 25 ['caffeine', 'carbamazepine', 'monensin', 'sulfadiazine', 'sulfamethoxazole', 'trimethoprim', 'tylosin'] trimethoprim
Removal of selected pharmaceuticals and personal care products in reclaimed water during simulated managed aquifer recharge 35 the science of the total environment 2018 21 ['atenolol', 'carbamazepine', 'lincomycin', 'primidone', 'propranolol', 'sulfamethazine', 'trimethoprim'] trimethoprim
Occurrence of pharmaceuticals and their metabolites in sewage sludge and soil: a review on their distribution and environmental risk assessment 27 trends in environmental analytical chemistry 2021 27 ['ciprofloxacin', 'estradiol', 'ofloxacin', 'triclocarban', 'triclosan'] estradiol
Biosorption of pharmaceutical products by mushroom stem waste 36 chemosphere 2019 23 ['estradiol', 'paracetamol'] estradiol
Impact of biochar amendment on the uptake, fate and bioavailability of pharmaceuticals in soil-radish systems 37 journal of hazardous materials 2020 17 ['acetaminophen', 'caffeine', 'carbadox', 'carbamazepine', 'estradiol', 'estrone', 'lamotrigine', 'lincomycin', 'oxytetracycline', 'sulfadiazine', 'sulfamethoxazole', 'tetracycline', 'triclosan', 'trimethoprim', 'tylosin'] estradiol
Prioritizing environmental risks of pharmaceuticals and personal care products in reclaimed water on urban green space in Beijing 38 the science of the total environment 2019 15 ['estradiol', 'medroxyprogesterone', 'medroxyprogesterone acetate', 'megestrol', 'megestrol acetate', 'ofloxacin', 'progesterone', 'roxithromycin', 'sulfamethoxazole'] estradiol
Influence of the cell design in the electroremoval of ppcps from soil slurry 39 chemical engineering journal 2017 12 ['estradiol'] estradiol
A review of the occurrence of selected micropollutants and microorganisms in different raw and treated manure‚ environmental risk due to antibiotics after application to soil 13 the science of the total environment 2019 66 ['chlortetracycline', 'enrofloxacin', 'ofloxacin', 'oxytetracycline', 'sulfamethazine', 'tetracycline'] oxytetracycline
A new approach for the extraction of tetracyclines from soil matrices: application of the microwave-extraction technique 40 analytical and bioanalytical chemistry 2018 17 ['chlortetracycline', 'oxytetracycline', 'tetracycline'] oxytetracycline
Impact of biochar amendment on the uptake, fate and bioavailability of pharmaceuticals in soil-radish systems 37 journal of hazardous materials 2020 17 ['acetaminophen', 'caffeine', 'carbadox', 'carbamazepine', 'estradiol', 'estrone', 'lamotrigine', 'lincomycin', 'oxytetracycline', 'sulfadiazine', 'sulfamethoxazole', 'tetracycline', 'triclosan', 'trimethoprim', 'tylosin'] oxytetracycline
Biochar affects the dissipation of antibiotics and abundance of antibiotic resistance genes in pig manure 41 bioresource technology 2020 16 ['ciprofloxacin', 'florfenicol', 'ofloxacin', 'oxytetracycline', 'sulfamethazine', 'tetracycline'] oxytetracycline
UV/VIS light induced degradation of oxytetracycline hydrochloride mediated by co-tio2 nanoparticles 42 molecules 2020 15 ['oxytetracycline', 'tetracycline', 'tetracycline hydrochloride'] oxytetracycline
Uptake and accumulation of emerging contaminants in soil and plant treated with wastewater under real-world environmental conditions in the Al hayer area (Saudi Arabia) 2 the science of the total environment 2018 58 ['atenolol', 'caffeine', 'carbamazepine', 'diazinon', 'gemfibrozil', 'ibuprofen', 'naproxen'] atenolol
Root uptake of atenolol, sulfamethoxazole and carbamazepine, and their transformation in three soils and four plants 43 environmental science and pollution research 2019 39 ['atenolol', 'carbamazepine', 'sulfamethoxazole'] atenolol
Sorption of pharmaceuticals to soil organic matter in a constructed wetland by electrostatic interaction 44 the science of the total environment 2018 38 ['atenolol', 'carbamazepine', 'ibuprofen'] atenolol
Uptake of atenolol, carbamazepine and triclosan by crops irrigated with reclaimed water in a mediterranean scenario 45 ecotoxicology and environmental safety 2020 26 ['atenolol', 'carbamazepine', 'triclosan'] atenolol
Removal of selected pharmaceuticals and personal care products in reclaimed water during simulated managed aquifer recharge 35 the science of the total environment 2018 21 ['atenolol', 'carbamazepine', 'lincomycin', 'primidone', 'propranolol', 'sulfamethazine', 'trimethoprim'] atenolol

Limitations

  • described PPCP can be related to the different groups of therapeutic usage within the same target group or between different target groups;
  • incomplete keywords for the search -- however, the analytical sample is large enough to make main conclusions;
  • incomplete information provided in abstract only -- for the full analysis it might be better to utilise the section "Materials and Methods" to determine both the environmental matrix and studied pharmaceuticals;
  • an incomplete list of words and phrases for search is provided in the UBA database. However, the database collects information on PPCP detected in natural environments, so it is worth taking it into account. Some of the limitations resulted in 2 manual manipulations: search of papers with irrelevant matrix (can be fixed with the use of materials and methods section and more sophisticated approach to analysing texts), a search of PPCPs not included in search base (can be fixed by use of another database for comparison).

Acknowledgements

The study was supported by the Russian Science Foundation grant No. 22-24-01103, https://rscf.ru/project/22-24-01103/

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💊 Analytics: trends of studying of pharmaceuticals and personal care products in soil matrix


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