Beast code in Giters

Pall Melsted's repositories

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Language:C++BSD-2-Clause198 12 70

pizzly

Fast fusion detection using kallisto

Language:C++BSD-2-Clause80 12 41

KmerStream

Streaming algorithm for computing kmer statistics for massive genomics datasets

Language:C++52 6 14

dbg

Naive de Bruijn graph implementation in python

Language:Python34 4 1

BFCounter

Language:C++GPL-3.023 5 7

mindex

mindex: a tool for indexing genomes for screening set of reads

Language:C++BSD-2-Clause9 20

AM_2024

Analaysis for the batch correction paper

Language:PythonBSD-2-Clause8 2 1

pyGFA

GFA transformations implemented in Python

Language:PythonGPL-2.07 20

BUSZ_paper

Language:PythonMIT1 20

kallistoscope

Language:C++1 10

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

ckeditor4-react

Official CKEditor 4 React component.

Language:TypeScriptNOASSERTION000

CloudCoder

A web-based programming exercise system.

Language:JavaScriptAGPL-3.0010

homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

Language:RubyNOASSERTION010

kallisto

Near optimal RNA-Seq quantification

Language:C++NOASSERTION010

kallisto-sleuth-workshop-2016

materials and website for the 2016 kallisto sleuth workshop

Language:CSS010

klib

A standalone and lightweight C library

Language:C010

kmerthon

020

streaming-talk

Language:C010

structure

The structure software

Language:C010