Note: The data processing pipeline notebooks have been moved to the main pmc-tables
repo. The pmc-tables-pipeline
repo has been archived.
graph TD;
statistics.ipynb --> download.ipynb;
to_download.ipynb --> download.ipynb;
download.ipynb --> archive_to_hdf5.ipynb;
archive_to_hdf5.ipynb --> query_mutation_tables.ipynb;
presentation.ipynb;
project_report.ipynb;
This repository contains the pipeline for extracting and processing tables from PubMed Central and Europe PMC.