Patrice Mascalchi's starred repositories
SimpleITK-Notebooks
Jupyter notebooks for learning how to use SimpleITK
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
github-downloads-count
A script to get downloads count of your GitHub repositories
BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
NanoJ-Fluidics
Manual, source-code and binaries for the NanoJ-Fluidics project
unet_segmentation_metrics
Metrics for determining segmentation accuracy
mesoSPIM-control
Image acquisition software for mesoSPIM light-sheet microscopes.
PythonForAivia
Python scripts library for Aivia. Ask your questions on the forum >>
Interactive-H-Watershed
preview watershed results on the fly as you update segmentation parameters
FastFUCCI-tracking
Set of macros to track individual FastFUCCI cells with Trackmate plugin for ImageJ/Fiji
localize-psf
Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.
cvapipe_figure_notebooks
Notebooks for reproducing figures in the cell variance paper
macro_manager
Macro Manager is a plugin for ImageJ to manage your own macros and allow simple execution and editing.