Patrick Marks's repositories
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
clap
A full featured, fast Command Line Argument Parser for Rust
hdf5-rs
HDF5 for Rust
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
jax-md
Differentiable, Hardware Accelerated, Molecular Dynamics
libdeflater
Rust wrapper for libdeflate 🗜️
ndarray-examples
A collection of examples leveraging the ndarray ecosystem.
plotly
Plotly for Rust
read-structure-examples
Example Read Structures for BAM <-> FASTQ
rust-bindgen
Automatically generates Rust FFI bindings to C (and some C++) libraries.
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
rust-intel-mkl
Redistribute Intel MKL as a crate
simdeez
easy simd
sprs
sparse linear algebra library for rust