Return threshold in output?
maryellenlynall opened this issue · comments
Mary-Ellen Lynall commented
Would it be possible to return the doublet threshold as part of the standard output, rather than only printing to console, so that it can be used programatically?
The full output becomes very unwieldy with an R environment with multiple large datasets so it would be v helpful to have this as a standard output to help interpret the doublet scores in the output.
Pierre-Luc commented
Good point, now saved in metadata(sce)$scDblFinder.threshold
Mary-Ellen Lynall commented
Thanks!
Pierre-Luc commented
(fyi I had introduced a mistake through a typo in the same time, just pushed the fixed version now)
Mary-Ellen Lynall commented
Many thanks!