plger / scDblFinder

Methods for detecting doublets in single-cell sequencing data

Home Page:https://plger.github.io/scDblFinder/

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Return threshold in output?

maryellenlynall opened this issue · comments

Would it be possible to return the doublet threshold as part of the standard output, rather than only printing to console, so that it can be used programatically?
The full output becomes very unwieldy with an R environment with multiple large datasets so it would be v helpful to have this as a standard output to help interpret the doublet scores in the output.

Good point, now saved in metadata(sce)$scDblFinder.threshold

(fyi I had introduced a mistake through a typo in the same time, just pushed the fixed version now)

Many thanks!