pkimes

sigclust2

tests for statistical significance of clustering

benchmark-fdr

Benchmarking study of recent covariate-adjusted FDR methods

spliceclust

visualization tools for exon/junction coverage

2020-mimic-bias

benchmark-fdr-html

Additional files for FDR benchmarking paper

otherfdr

Collection of other FDR methods

PR2020replicathon

upbm

Tools for analyzing universal protein binding microarrays (uPBMs)

PR2019replicathon

Replicability Hackathon, IQ BIO REU (UPR-RP)

2021-mimic-misc

bidmc-datathon

Materials for the BIDMC datathon (Sat 29 Feb 2020)

book

Compiled and pretty version of labs

c-data-2017

dfci-example

dfci-introR

Code and data for DFCI seminar - Introduction to R and RStudio

edx_adv_bioc

course development, adv bioc

labs

Rmd source files for the HarvardX series PH525x

MiTie

The RNA-seq transcript predictor for multiple samples

notebooks

Notebooks and resources for the Tokyo Datathon 2023

pkimes.github.io

personal site remade using blogdown/hugo

pyNBS

Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

rafalab.github.io

web page

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

SigFuge

Significance of clustering in per-base pileups

site-source

SummarizedBenchmark

swfdr

Science-wise false discovery rate package

top-10

top 10 challenges in dat science

upbmAux

upbmData