quahratic function's repositories
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
biospark
Cambridge Gravity BioSpark Challenge 2022/23 - CRISPR database visualisation platform
password_generator
Python script to generate random passwords.
R_bookclub18
Notes and code from the Sainsbury Laboratory Cambridge University book club.
WormStraightener
ImageJ macro to straighten a directory of images.
bad-boids
A deliberately badly programmed implementation of Boids for teaching
chipseq-smk
A custom Snakemake pipeline for ChIP-seq analysis in bioinformatics.
easy-markdown-beamer-pandoc
Simple things nobody tells you how to do
Farmpy
Python3 package to handle job submission to a compute farm
github_example
working repository for rse course
intro-stan-python
Notebooks with introductory material on using Stan, from Python
ISL-python
Porting the R code in ISL to python. Labs and exercises
ISLR-python
An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code
manim
Animation engine for explanatory math videos
odgi
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
phd-thesis-template
My customised version of the popular LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
poole
The Jekyll Butler. A no frills responsive Jekyll blog theme.
remark
A simple, in-browser, markdown-driven slideshow tool.
reveal.js
The HTML Presentation Framework
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
rsd-engineeringcourse
Materials for Turing's Research Software Engineering course
sc_mixology
This contains the dataset for comparing scRNA-seq analysis methods
single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
slurm
Cookiecutter for snakemake slurm profile
snakemake-slurm-profile
Profile for running snakemake with slurm job submissions
styles
Official repository for Citation Style Language (CSL) citation styles.
weighted_k_means
A weighted k-means implementation.