Personalized Immunotherapy Research Lab @ UNC

mhcgnomes

Parsing MHC nomenclature in the wild

Landscape-and-Selection-of-Vaccine-Epitopes-in-SARS-CoV-2

Code and data for "Landscape and Selection of Vaccine Epitopes in SARS-CoV-2"

binfotron

python-project-template

Template of a basic Python project

variform

Variant isoform detection for large mutations in long-read RNA sequencing

are-we-good

CI status of every project we develop and/or help maintain

datasetprep

Methods to make life easier when preparing datasets for analysis.

golfy

Heuristic solver for pooled peptide experiment design

housekeeping

picard

Adds magrittr to docker://broadinstitute/picard:2.27.5 to bypass error when using apptainer.

PrePostMiXCR

Functions for writing commands and post processing the MiXCR pipeline.

rserver

rserver

rserver-binfotron

Bowtie2

Dockerfile and examples for using Bowtie2

coding-guidelines

Coding guidelines and recommendations for tools developed by PIRL

command-line-tools

Tools helpful for working with data, nextflow, etc.

HLAProfiler

lenstools

mHA-dockerfile

MiXCR

Dockerfile and script to run MiXCR

MiXCR-2.1.7

Dockerfile and script to run MiXCR 2.1.7 RNAseq

MiXCR-amplicon-2.1.7

Dockerfile & script used for the diversity paper MiXCR amplicon runs.

nutm1-fusions

Hunting for T-cell epitopes in recurrent NUTM1 somatic fusions

rserver-immunesubtypes

hosts dockerfile for running immune subtypes package

rserver-impro

rserver-postproc-rnaseq

Dockerfile to make RStudio server for doing post processing of rnaseq data using the StarSalmon R-package

TCRpMHCdataset

Python Class for Handling Many-to-Many Nature of TCR::pMHC Data

tide

VincentLabFormatter

vstol