Pinello Lab's repositories
DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
haystack_bio
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
pyrovelocity
𝒫robabilistic modeling of RNA velocity ⬱
pychromVAR
A python package for chromVAR
PrimeDesign
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
MotifRaptor
Explore the effect of genetic variants on transcription factor binding sites
CRISPRlungo
Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements
simba_comparison
Scripts used for performance comparison in SIMBA manuscript.
perturb-tools
Analysis Framework for Pooled CRISPR Genome Editing Screens
STREAM2_tutorials
Tutorials for STREAM2 https://github.com/pinellolab/STREAM2
plot_generation_CRISPRme
repo to generate CRISPRme plots for paper
rms_analysis
single cell data analysis for rms