pietrobarbiero / dbgen

Database for genetics

DBGen - General purpose database for genomic data analysis

DBGen is a python package providing a general purpose database to support genomic data analysis studies.

The current implementation is based on mongoDB.

Quick start

You can install DBGen along with all its dependencies from PyPI:

$ pip install -r requirements.txt dbgen

Source

The source code and minimal working examples can be found on GitHub.

Documentation

Documentation for the latest stable version is available on ReadTheDocs.

Running tests

You can run all unittests from command line by using python:

$ python -m unittest discover

or coverage:

$ coverage run -m unittest discover

Contributing

Please read the contributing section for details on our code of conduct, and the process for submitting pull requests to us.

Authors

Pietro Barbiero, Computational Scientist.

Licence

Copyright 2020 Pietro Barbiero.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at: http://www.apache.org/licenses/LICENSE-2.0.

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

See the License for the specific language governing permissions and limitations under the License.