pierpal

Pier Palamara's repositories

Fast, whole-genome simulation of the discrete time Wright-Fisher process

Language:JavaApache-2.016 5 1

Hinton and Nowlan's experiment on Baldwin effect

Language:JavaApache-2.03 20

Infer mutation and gene conversion rates using identical-by-descent segments

Language:JavaApache-2.03 2 1

Ascertained Sequentially Markovian Coalescent

Language:JavaGPL-3.02 10

Demographic reconstruction via IBD sharing

Language:JavaApache-2.02 30

Parses a file describing the demographic history of one or more populations

Language:JavaApache-2.0020

Haplotype phasing software

Language:C++010

GENOME coalescent simulator, modified to output ground truth IBD segments.

Language:C++NOASSERTION020

Parses Newick trees from FastSimCoal and outputs IBD segments

Language:JavaApache-2.0020