Shufang Cai, Delin Mo, et al., State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong, China.
The codes are based on R V.3.5.2. The following libraries will be required.
- Seurat (v3.1.1)
- monocle (v2.10.1)
- SCENIC (v1.1.2-2)
- GENIE3 (v1.4.3)
- RcisTarget (v1.2.1)
- AUCell (v1.4.1)
- clusterProfiler (v3.10.1)
- Signac (v0.2.2)
- ggplot2 (v3.0.0)
- pheatmap (v1.0.10)
- cowplot (v0.9.4)
- dplyr (v0.8.0.1)
- RColorBrewer (v1.1-2)
- GenomicRanges (v1.34.0)
- tibble (v2.1.1)
- org.Ss.eg.db (v3.7.0)
- UpSetR (v1.3.3)
- scales (v1.1.1)
Peer review in process, please contact email modelin@mail.sysu.edu.cn