pi-stepien

SegGPT-FineTune

Fine-tune SegGPT model with custom datasets

uv

An extremely fast Python package installer and resolver, written in Rust.

hadolint

Dockerfile linter, validate inline bash, written in Haskell

grobid

A machine learning software for extracting information from scholarly documents

cellseg_models.pytorch

Encoder-Decoder Cell and Nuclei segmentation models

Stabl

deconvolution

Python module for performing (automatic) colour deconvolution.

HistomicsTK

A Python toolkit for pathology image analysis algorithms.

DeepSlice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

nbstripout

strip output from Jupyter and IPython notebooks

aizynthfinder

A tool for retrosynthetic planning

faiss

A library for efficient similarity search and clustering of dense vectors.

paper-qa

LLM Chain for answering questions from documents with citations

Matcher

[ICLR'24] Matcher: Segment Anything with One Shot Using All-Purpose Feature Matching

SAMed

The implementation of the technical report: "Customized Segment Anything Model for Medical Image Segmentation"

MedSAM

Segment Anything in Medical Images

data-centric-ai

Resources for Data Centric AI

RFNext

RF-Next: Efficient Receptive Field Search for CNN(TPAMI2022, CVPR2021) Try it, you wouldn't regret it!

Personalize-SAM

Personalize Segment Anything Model (SAM) with 1 shot in 10 seconds

Painter

Painter & SegGPT Series: Vision Foundation Models from BAAI

SeBRe

Developing a Brain Atlas through Deep Learning

rdkit

The official sources for the RDKit library

pymde

Minimum-distortion embedding with PyTorch

Dicom_RT_and_Images_to_Mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

stardist

StarDist - Object Detection with Star-convex Shapes

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

platipy

Processing Library and Analysis Toolkit for Medical Imaging in Python

pydicomext

Extensions to Python module to loading DICOM files

dicom2nifti