phydev

PhyBio

Making phase-field modelling simpler.

ProstProject

Modelling prostate cancer growth

SPiCCAto

Software developed to study the influence of the extracellular matrix in cell migration.

angio

Developing a 3D phase-field modelling for tumor angiogenesis

tcga-supertreat

Download gene expression data from TCGA for a subset of patients selected in the SuPerTreat project.

actomyosin

phy_utils

Personal library of codes developed for data analysis.

PhyBioJS

Introducing multi-phase-field models for biological systems in the browser with JavaScript and Plot.ly!

BD4QoL

Code used in the BD4QoL project.

cells

Simulating a multicellular system with a phase-field model

cells3d

CELLTAS

CELLular migraTion mAchine Simulator

data

fftw

Laplace Solver with Fast Fourier Transform in the West

ggbiplot

A biplot based on ggplot2

gists

fragment of codes to be executed on the cloud

hmodel

An implementation for the Model H applied to multicellular systems

jupyter_notebooks

This is my personal collection of jupyter notebooks. I am sharing it in hope of being useful for someone else.

laplace3d

3D laplace equation solver implemented with a 3D virtual topology in MPI

MetSim

mice

Multiple imputation with chained equation implemented from scratch. This is a low performance implementation meant for pedagogical purposes only.

phydev

Phydev's GitHub profile.

phydev.github.io

phydev.github.io

PyBlog

Serverless blog system powered by python and GitHub Actions.

PyBot

Python Console in twitter.

RCourse

R with Tidyverse material for advanced experimental design course

scripts

Collection of scripts for research related tasks

supertreat_api

SuPerTreat prediction models API

systems-oncology

Finite Element method and finite differences implementations for Fokker-Planck equation

trajpy

Trajectory classifier for nanoparticles, cells & whatelse.