Phuwanat's repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
checkVCF
Sanity check Variant Call Format (VCF) files.
fgwas
Functional genomics and genome-wide association studies
fusion_twas
methods for functional summary-based imputation
integrative
Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization
MKLMM
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
nuxt-auth-examples
Deployed Nuxt examples
pheweb
A tool to build multi-phenotype GWAS browsers
PrediXcan
Code for the in-dev PrediXcan Project
sort_VCFs_wf
Merge individual sample VCFs to create a unified multi-sample VCF, optionally allowing for modification of sample names.
vcfToGds
Convert Vcf files to Gds format
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.