photocyte

doSameSpeciesLiftOver_nextflow

A NextFlow pipeline to lift over GFF3 files using the UCSC liftover tools

photocyte.github.io

Personal website, built with hydejack

funannotate

Eukaryotic Genome Annotation Pipeline

InterPro_API_domain_toolkit

A wrapper around some simple Python scripts, to query the InterPro API with respect to fetching domains

bioconda-recipes

Conda recipes for the bioconda channel.

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

bioicons

A library of free open source icons for science illustrations in biology and chemistry

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

cas

Content Addressible Storage

chaipcr

The software behind Chai's open-source Real-Time PCR instrument

flo

Same species annotation lift over pipeline.

foam

Foam low-code for coders app development framework

frame-codebase

The complete codebase for Frame

g2p_mapper

general_scripts

gffkit

A lightweight python toolkit for common manipulations on GFF3 files

gffutils

GFF and GTF file manipulation and interconversion

HQAlign

interproscan_parallel

A Nextflow pipeline that wraps InterProScan , including making it parallelized & doing some plotting

labop

Protocol Activity Modeling Language

mosh-static

Static builds of mosh-server

mview

MView extracts and reformats the results of a sequence database search or multiple alignment.

OrthoFinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

powershell_auto_mzml_convert

This is a powershell script that "walks" through a directory, and converts all the native liquid-chromatography mass-spectrometry files into .mzML format, using MSConvert

PPYR_OGS

Official Geneset (OGS) for Photinus pyralis, at least until I figure out a long term alternative

pySBOL3

Native python implementation of SBOL 3.0 specification

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

statements

Successful Job Applications and Grants

taskwarrior-reminders

Synchronize Taskwarrior with iOS Reminders

ucsc-ospo