Simple R functions for importing and analyzing electrophoresis data from Agilent systems (Bioanalyzer, TapeStation, Fragment Analyzer, ZAG DNA Analyzer, Femto Pulse).
Install the required dependencies:
> install.packages(c("XML", "base64enc", "plyr", "ggplot2"))
Install the newest release (includes 22 MB of demo data):
> install.packages("https://github.com/jwfoley/bioanalyzeR/releases/download/v0.10.0/bioanalyzeR_0.10.0.tar.gz", repos = NULL)
or, install the newest release without the demo data:
> install.packages("https://github.com/jwfoley/bioanalyzeR/releases/download/v0.10.0/bioanalyzeR_0.10.0-no_data.tar.gz", repos = NULL)
See the vignette online or in R:
> vignette("bioanalyzeR")
This package is a work in progress and likely to change significantly from version to version. Watch the repository on GitHub and be sure to keep up to date with the latest release. R will not automatically install updates because the package is not yet hosted on an official R repository.
If you discover a problem with the package (even if it's just confusing documentation), first verify you have the latest release installed. Then the best way to get help is by submitting a GitHub issue. Otherwise email the author. Please include minimal code and data required to reproduce the problem; you can anonymize the samples if appropriate.