pho3nix96's starred repositories
pytorch-lightning
Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sankeymatic
Make Beautiful Flow Diagrams
ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Nutrition5k
Detailed visual + nutritional data for over 5,000 plates of food.
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
genomes-pipeline
MGnify genome analysis pipeline
AzureSynapseEndToEndDemo
This repository provides one-click infrastructure and artifact deployment for Azure Synapse Analytics to get you started with Big Data Analytics on a large sized Health Care sample data. You will learn how to ingest, process and serve large volumes of data using various components of Synapse.
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
Snakemake_Tutorial
A short tutorial on getting started with Snakemake for workflow management
nextflow-example
A simple DSL2 workflow: tutorial
mikropml-snakemake-workflow
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
AGPMicrobiomeHostPredictions
A broad search for significant microbiome-modifying host variables from the American Gut Project public microbiome data
benchdamic
Benchmark of differential abundance methods on microbiome data
Physalia_EnvMetagenomics_2023
Environmental metagenomics, Spring 2023, Physalia Courses