phiweger

uv

Finding prophage regions in bacterial genomes using brute force

darkq

A message queue for genomic surveillance

faltwerk

A library for spatial exploratory data analysis of protein structures

foldvis

Protein visualization without the pain

panprimer

Design strain-specific primers from pangenomes

adaptive

Supporting information for a study on adaptive nanopore sequencing

boxes

virtualbox + vagrant + ansible = freedom

primer4

Validating mutations without the pain

ibm3202

Google Colab Tutorials for IBM3202

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

primer

Automatic primer design for variant validation

3Dmol.js

WebGL accelerated JavaScript molecular graphics library

anki_cards_from_kindle_notes

Use GPT to generate Anki learning cards from Kindle e-reader highlights

bothie

cosmis

COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino acid sites covering >80% (16,533) of human proteins.

delta

dMaSIF

evobiochem

Working repo to explore the link between evolution and biochemistry

generative_agents

Generative Agents: Interactive Simulacra of Human Behavior

InteracDome

Compute Site-Based Ligand-Binding Frequencies across the InteracDome

micnet

A neural net to predict antimicrobial susceptibility from microscopy images

mock_no_input

A minimal workflow for testing that does not require input files

mocks

Files for testing

nucleoform

A language to manipulate and learn from genomic data

openai_function_call

Helper functions to create openai function calls w/ pydantic

phiweger.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

plastic

rmarkdown_reports

collection of rmarkdowns by tools

sourmash

Compute and compare MinHash signatures for DNA data sets.

wf_annotation

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