Beast code in Giters

Philipp Rescheneder's repositories

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Language:C++MIT284 22 96

catfishq

Cat FASTQ files

Language:PythonMIT8 3 15

pipeline-nanopore-ref-isoforms

Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools

Language:PythonNOASSERTION3 10

straglr

Language:PythonNOASSERTION300

IGV

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Language:Java1 20

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CMIT1 20

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell010

cwltool

Common Workflow Language reference implementation

Language:PythonApache-2.0020

fast5_research

Fast5 API provided by ONT Research

Language:PythonNOASSERTION010

fieldbioinformatics

The ARTIC field bioinformatics pipeline

Language:PythonMIT010

genomeview

Language:Python020

marginPhase

Language:CMIT020

medaka

Sequence correction provided by ONT Research

Language:PythonNOASSERTION010

modbam2bed

Language:CMPL-2.0000

NucDiff

In-depth characterization and annotation of differences between two sets of DNA sequences

Language:PythonMPL-2.0010

parasail-python

Python bindings for the parasail C library.

Language:PythonNOASSERTION020

seqtk

Language:C020

svviz2

for visual evaluation of read support for structural variation

Language:Python020