Phillip Labuschagne's repositories
EpitopeMatcher
A package that can be used to find out how well the epitopes in a patient's virus' will be recognized by the HLA's present in the patient.
logOfGamma
Computes log or gamma for large values
hdsResistanceModel
A Hybrid Dynamic/Stochastic Model of HIV Resistance Evolution
hiv-founder-id
Estimate founders of HIV-1 infection using nucleotide sequences from very acute infection
lml
Little scripts I write/copy for learning machine learning
MotifBinner2
Software for processing PID/barcoded Illumina sequence data
nvim_config
My nvim configuration
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
quasispecies_sim_reports
Results from investigations into the effect of recombination and immune pressure on quasispecies diversity metrics
SIF
sentence embedding by Smooth Inverse Frequency weighting scheme
wda
Analysis for NOAA GHCN DAILY data
wda-notes
Notes and tasks related to philliplab/wda
yasss
Yet Another Short Sequence Simulator