phamidko

rstudio-mofa2

Base Rstudio docker container for Multi-Omics Factor Analysis V2 (MOFA+)

_jax_

go-ncRNA

non coding RNA structure inferences in Golang

ann-benchmarks

Benchmarks of approximate nearest neighbor libraries in Python

ansible_mongodb

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

CGMM

Official repository of "Contextual Graph Markov Model: A Deep and Generative Approach to Graph Processing", ICML 2018

codesnippets

deeprank

Deep Learning for the ranking of protein-protein conformations

etcd

Distributed reliable key-value store for the most critical data of a distributed system

geometry-central

Applied 3D geometry in C++, with a focus on surface meshes.

gnina

A deep learning framework for molecular docking

go-operator

Hackathon

Multi-omics studies are available here

jx3-cluster

jx3-infra

log

opencga

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

opencga-cli

opencga-operator

phamidko.github.io

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

plmc

Inference of couplings in proteins and RNAs from sequence variation

rdkit-scripts

A collection of cheminformatics scripts that use rdkit

rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

statisticalScaffold

terraform-aws

upwork-valhala

Wochenende

A whole Genome/Metagenome Sequencing Alignment Pipeline

zettaservicenow