pha4ge / hAMRonization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

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Flag to filter report for genomic/non-genomic audience

fmaguire opened this issue · comments

For the interactive report or tabular report possibly have an option to just summarise results (genome, gene, tool, versions, phenotype annotation) and the full genomics results (i.e., the whole spec with start/stop contig coverage etc).

Requires consensus on a list of fields of use for non-genomics audience, hopefully discussion will come out of PAHO trial.

Should this be integrated in the scheme validation? (related to #6)

Nah, its just a convenience feature for the interactive HTML report.