Finlay Maguire's repositories
AMR_Metagenome_Simulator
Nextflow workflow for simulating a metagenome with inserted AMR genes
pangolin_specific_version_tool
Simple script to install a specific pangolin (and dependencies) versions
vector_figures
Collection of conceptual SVG figures created by me for talks
incel_social_media_descriptive_analysis
Social media analysis code for incel descriptive language project
quick_amr_db_harmonisation
Quick dirty way of mapping ResFinder and NCBI AMR databases to CARD's ARO
fmaguire.github.io
Personal webpage
incel_sexual_violence
Repository for supporting frequency data re: incel use of sexually violent language
amplicon_scheme_hasher
Simple tool for hashing and comparing hashes of amplicon scheme bed files.
bactopia.github.io
Bactopia Documentation
BandageBLAST
BLAST functionality of Bandage
bioconda-recipes
Conda recipes for the bioconda channel.
ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
ncov-watch
Tools for detecting mutations of interest in SARS-CoV-2 sequencing results
nf-flu
Influenza genome analysis Nextflow workflow
nullip_incontinence
Analysis and plotting code use for an analysis of incontinence in nulliparas using the NHANES database
pLannotate
Webserver and command line tool for annotating engineered plasmids
primer-schemes
Schemes for SarsCoV2 sequencing
primer-schemes-artic
Primer schemes for real-time genome epidemiology
recomb_mem_test_data
Random 10k sampled test data for MEM/Recomb idea
segregation_abuse_foipop
Analysis of NS correctional facility segregation FOI data
setup-miniconda
Set up your GitHub Actions workflow with conda via miniconda