Patrick Cudahy's repositories
cookiecutter-r-analysis-template
Cookiecutter template for R data analysis with jupyter notebooks
weather_station
Micropython-based weather station
Mtb_genomic_lists
Curated lists of features for Mtb genomic analysis
auto-selfcontrol
Small utility to schedule start and stop times of SelfControl
Bio-DB-NCBIHelper
BioPerl modules for accessing data from NCBI
epm_301_aa
Mock outbreak investigation
ggdag
:arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
linuxbrew-core
🍻🐧 Core formulae for the Homebrew package manager on Linux
LMPTHW
Learn more python 3 the hard way exercises
LSHTM_EPM_202
LSHTM EPM_202 workbook exercises in R
micropython-waveshare-epaper
MicroPython drivers for Waveshare e-paper modules
mlrpt-runner
Schedule mlrpt captures of meteor-2 data on a raspberry pi using systemd
nitter_redirect_ng
A browser extension that redirects Twitter links to Nitter instead.
python_koans
Python Koans - Learn Python through TDD
r-conda
R and RStudio via conda packages in repo2docker
SICP-exercises
Wizard book exercises
sos
SoS workflow system for daily data analysis
sos-r
SoS extension for R
vcfProcess
Variant Call Format to CSV and FASTA with filtering of SNPs and INDELs and identification of mixed infection