pftsai1112/dicom-interface

DICOM RT-Ion interface for MC simulation

Current version is BETA as of Aug14, 2019

DICOM RT-Ion interface, shortly RTI, is a library to convert treatment planning information in DICOM format into Monte Carlo components on-the-fly such as geometries and beam source. The RTI allows integration of DICOM-RT Ion interface within a MC engine to provide more reliable and consistent performance than with a script-based processing to interpret DICOM information. For the Monte Carlo simulation, TOPAS extensions of geometry and particle source to connect RTI are provided.

DICOM-RT objects utilized in this interface are

Ion Plan (RTIP)
Ion Beams Treatment Record (RTIBTR)
CT image
RT-Dose

note: RT Plan is not supported (2019. July 22).

Beamline geometries, gantry and patient coordinate systems, and fluence map are determined from RTIP and/or RTIBTR. CT image and Dose are used only for patient dose calculations.

Getting started

Requirements

TOPAS (version 3.2) is required and assumed pre-installed. tested versions are 3.2 and 3.1
GDCM (tested versions are 2.4 and 2.6.) library (header and objects) is required. tested versions are 2.4 and 2.6. version 3.0 doesn't work with RTI (thank to Dohyeon).

Tested operating systems

Mac OS X
- 10.14.5, clang++ (LLVM version 10.0.1, /usr/bin/c++)
- cmake version 3.x
Red Hat Enterprise Linux Server release 6.7
- g++ (4.9.0)

Installation

As RTI is a header only library, copy or download the files to somewhere in your system.

$ cd /<your_sw_path>/
$ git clone https://github.com/topasmc/dicom-interface rti.git

Then, go to the directory where your topas is installed.

$ cd /<your_topas_path>/

Add two lines in CMakeList.txt as following:

include_directories (
    ${CMAKE_BINARY_DIR}
    ${CMAKE_BINARY_DIR}/extensions
    ${PROJECT_SOURCE_DIR}/Geant4Headers
    ${PROJECT_SOURCE_DIR}/include
    /<your_sw_path>/rti.git/
    /<your_gdcm_include_path>/gdcm-<version>/
)

$ cmake -DTOPAS_EXTENSIONS_DIR=/<your_sw_path>/rti.git/rti/topas/rtion .
$ make -j4

Run a test

$ cd /your_sw_path/rti.git/test/topas/
$ topas beam_view.txt

For more detail, please see this project's wiki page https://github.com/topasmc/dicom-interface/wiki.

Authors

Shin, Jungwook: main developments and documentations.
Hueso-Gonzalez, Fernando: documentations and discussion
Edmunds, David: GPU (cuda) implementation
Kooy, Hanne, M. : Advisor
Paganetti, Harald : Advisor
Clasie, Benjamin M. : Advior

Acknowledgements

This project is initiated by Massachusetts General Hospital and continuously supported by a NIH grant, TOPAS project (U24).

How to cite

Please cite this paper: https://doi.org/10.1016/j.ejmp.2020.04.018

License (TBD):

This project is licensed under - see the LICENSE.md file for details.

pftsai1112 / dicom-interface