Jonathan Pevsner's repositories
SMRI_ms_ACC
Scripts and overview of project to analyze RNA-seq data from anterior cingulate cortex in schizophrenia
Bayesian_tutorial
Tutorial on Bayesian phylogenetic analysis
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
datasharing
The Leek group guide to data sharing
find_denovo
A simple tool for identifying *de novo* variants from a VCF/BCF file.
httr
httr: a friendly http package for R
ml-pitfalls
Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
metadata-in-rcr
code and data related to "The Role of Metadata in Reproducible Computational Research"
open-cravat
A modular annotation tool for genomic variants
RareVariantSimulation
We model the parameters affecting the persistence of deleterious alleles in a founder population
SEEKIN
SEEKIN: SEquence-based Estimation of KINship
seqtk
Toolkit for processing sequences in FASTA/Q formats
speedseq
A flexible framework for rapid genome analysis and interpretation