Petrov lab's repositories
HAFpipe-line
calculate haplotype-derived allele frequencies for pool-seq samples
bioinformatics-one-liners
my collection of bioinformatics one liners that is useful in my day-to-day work
cancer-HRI
Estimating patterns of selection in tumors stratified by mutational burden to account for Hill-Robertson Interference
Language:PythonMIT000
OT2-Protocols
Protocols for the Petrov Lab OT-2 Robot (WALL-E)
Language:PythonMIT000
POOLSEQ1_fastq_to_bam
scripts for QC-ing paired-end fastq files and mapping them to a reference genome
POOLSEQ2_bam_to_rawAF
scripts to calculate allele frequencies at segregating sites from bam files for a set of pool-seq samples