petrelharp

bio_610B

Course materials for Advanced Biological Statistics II, Bio 610B, at the University of Oregon.

landsim

efficient, forwards-time simulation of populations on raster-based landscapes

templater

Some tools for writing and compiling reports in R+markdown.

ftprime_ms

isolation_by_coalescence

popgen-visualization-course

slim_benchmarks

skelml

Skeleton for a repository that automatically updates a web page from latex source.

tortoisescape

treestats_ms

clinal-lineages

stoch_proc_notes

Notes from Math 607, Applied Stochastic Processes

administrative

project management documents and discussions for tskit development

bessel_relatedness

computing_boot_camp

Material for a short boot camp on using the shell and R.

eidos.vim

A minimal syntax highlighting plugin for Vim for SLiM's edios language

evolution_2016

france_2019

slides for a talk

fwdpy11_arg_example

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.

gene-flow-inference

interpolation_methods

landscape_msprime

msarg

tools to use R to create coalescent simulation scenarios on grids using ms

nw_prob_2019

Rotation_2020

Spring rotation project

scikit-allel

A Python package for exploring and analysing genetic variation data

SLiM-Extras

Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself

treeseq_poster

uo_2019_talk

A talk at the University of Oregon in October 2019.

uw_sept_2018

slides from a talk in Madison