pengzhangzhi

Awesome-Mamba

Awesome list of papers that extend Mamba to various applications.

self-taught-CS

The notes and Lab code of public courses I have taken.

protein-sequence-diffusion-model

diffusion model for protein sequence generation

ab_opt

Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.

Awesome-Computational-Structural-Biology

A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.

Benchmark-Traffic-flow-prediction-

curated baselines and evaluation metrics to benchmark the task traffic flow prediction

spatial-temporal-transformer

traffic flow prediction

Awesome-List-Protein-Binding-Site-Prediction-

List of papers on protein binding site prediction

ab_rmsd

Calculate the RMSD between two antibody structure (including nanobody and antibody).

Stable-Terminal

Your AI assitant in the terminal

accelerate

🚀 A simple way to train and use PyTorch models with multi-GPU, TPU, mixed-precision

antibody-structure-evaluation

evaluate predicted antibody structures against native structures

antibody-structure-prediction-benchmark-result

The benchmark results of antibody structure prediction models

Awesome-Optimal-Transport

Awesome list of resources about optimal transport

Beginner-Guidance-of-Diffusion-Models

Beginner Guidance of Diffusion Models

ByProt

cs-self-learning

计算机自学指南

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

dl-sys

The Homework Code of Deep Learning Systems Course

dotfiles

Default configurations in Linux system

EnQA

A 3D-equivariant neural network for protein structure accuracy estimation

equiformer-pytorch

Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding

genetic-algorithm-pytorch

Toy genetic algorithm in Pytorch

graphein

Protein Graph Library

ml-engineering

Machine Learning Engineering Guides and Tools

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

pengzhangzhi

GitHub profile

proj-tmpl

ProteinWorkshop

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities.

se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation