pekkakohonen

DILI

cmapR

Tools for manipulating annotated data matrices

sgnesR

simulation of gene expression profiles

BMDExpress-2

Software for analyzing high dimensional dose-response data

toxboot

Bootstrap Methods for ToxCast High Throughput Screening Data

widyr

Widen, process, and re-tidy a dataset

medrc

This is an older version of the medrc package. Please, take a look at the following link for an updated version:

ggplot2-book

ggplot2: elegant graphics for data analysis

RRegrs

Searching the best regression model using R (correlation filter, data scaling, best regression model, etc.)

dplyr

dplyr: A grammar of data manipulation

plyr

A R package for splitting, applying and combining large problems into simpler problems

rstudio

RStudio is an integrated development environment (IDE) for R

ggally

R package that extends ggplot2

ggally

Ally to ggplot2

ISA

Iterative Signature Algorithm and related tools

l1ktools

IntroToStatisticalLearningR-

Work on Introduction to Statistical Learning

stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

AGEP

Alignment of expression profiles

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

Risa

Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).