pedrofale

tumorevo

Simulate and illustrate tumor evolution.

zinbayes

A Bayesian model for scRNA-seq data.

rnn-forecaster-plugin

A plugin for Pentaho's Kettle which allows users to make data forecasts based on Recurrent Neural Network models trained on Weka using the wekaDeeplearning4j package. Code based on the Weka Scoring plugin by Mark Hall.

scrnaseq_benchmarking

Package to reproduce results in my MSc Thesis.

timeSeriesForecasting

Weka's Time Series Forecasting package by Mark Hall.

mpCMF

Package for a generative model for scRNA-seq data.

simple-PCA

A script to test PCA on simple problems

Thesis-Code

Scripts to test models relevant to my MSc Thesis on Machine Learning for Genomic Medicine

Diane

A personal assistant in my bedroom.

learning-git

Repo to learn how to git

RCI-Reliable-Message-Board

Project for the Computer Networks course at IST, Lisbon during the summer semester of 2016/17.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scVI

A deep generative model for gene expression profiles from single-cell RNA sequencing

Spoon-Knife

This repo is for demonstration purposes only.

wekaDeeplearning4j

Weka DL4J. Original code by Mark Hall

AutoML_Benchmark

Benchmarking auto-ML frameworks.

cytodata-hackathon-base

noc-examples-p5.js

Port to p5.js of Nature of Code examples

pangolin

BSSE COVID-19 sequencing of test swab samples

pedrofale.github.io

ridge_map

Ridge plots of ridges

vbpi-nf

Code for improved variational Bayesian phylogenetic inference with normalizing flows