pcrxn

NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

aligncov

Obtain tidy alignment coverage info from sorted BAM files

AmpliconPipeline

Pipeline for processing OLC 16S MiSeq runs with QIIME 2

antismash_gbk_to_table

BAGEL4

cd-hit-parse

Parse a CD-HIT cluster file to obtain the parent-child cluster provenance in TSV format

COWBAT

CFIA OLC Workflow for Bacterial Assembly and Typing

cowbat-docker

Dockerfile for COWBAT with updated SKESA version

fold-coverages-example

An example for creating a table of fold-coverages from sorted-bam-to-fold-coverage.py output

gencoflow

A genetic context analysis workflow

genemethods

Methods for GeneSeekr/GeneSippr

NanoQC

A Nextflow workflow for quality control of raw Nanopore sequence data

ProkkaFlow

A Nextflow workflow wrapper for annotating bacterial genomes with Prokka

in_silico_PCR

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

msc-thesis

multi-package-containers

Testing building mulled containers for multi-requirement tools.

randomize-fasta-headers

Randomize the headers of records in a FASTA file

singularity-dockerfiles

Read-only mirror of the HCC singularity dockerfiles repo.

td-bank-statement-parser

A workflow to parse PDF statements from Toronto-Dominion (TD) Bank into plain-text format