Paul Frandsen's repositories
insect_genome_assemblies
scripts used to download and analyze insect assemblies from GenBank
trichoptera_barcodes
Materials and scripts for "The Trichoptera barcode initiative: a strategy for generating a species-level tree of life"
PWS-472-Labs
Computational labs for PWS 472, Conservation Genomics
cfa
code challenge for cfa application
dagobah-training
Training ground for aspiring Galaxy skywalkers
Hydra-workshop
Materials for an introductory hydra workshop.
minimal-mistakes
A responsive Jekyll theme with clean typography and support for large full page images.
partition_def_from_fcc
This script creates a partition definition file from the FASconCAT outfile
PartitionedAlignments
publicly availalbe datasets set up for use with PartitionFinder
partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
partitionfinder_gsoc13
code for Google Summer of Code 2013 project, "Extend PartitionFinder to automatically partition DNA and protein alignments"
pbfrandsen.github.io
Website
python-code
a couple of simple examples of data manipulation code
QSUB_Generator
QSUB Generator located at http://www-app2.igb.illinois.edu/tools/qsub/
SI_scripts
scripts for SI folks
site_rate_calculation
site rate calculation and clustering
SPIN_workshop
materials for SPIN genomics workshop
STRI_07_2015
STRI introduction to Unix workshop
STRI_hydra
Materials for STRI workshop 4 Feb 2016
tree_of_life
code for tree of life paper