paulnagy

dicom-standard

The DICOM standard, in JSON format, parsed from the HTML version using Python scripts

TAB

OHDSI Open Source Technical Advisory Board

ImageWG

Repository for medical image working group

datascience_book

Perseus

[under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack

Data-Ingestion-and-Harmonization

Data Ingestion and Harmonization

Perseus

Atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

ClarityNLP

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

PINE

Collaborative NLP annotation tool supporting enterprise authentication, inter-annotator statistics, active learning

xnat-docker-compose

Build an XNAT server configuration with Docker Compose

azure-sdk-for-python

This repository is for active development of the Azure SDK for Python. For consumers of the SDK we recommend visiting our public developer docs at https://learn.microsoft.com/python/azure/ or our versioned developer docs at https://azure.github.io/azure-sdk-for-python.

power-bi-python-api

The Unofficial Python API wrapper for the Microsoft Power BI REST API.

ms-graph-python-client

A Python Client Application that allows users to interact with the Microsoft Graph API.

azure-sql-data-project

A python application that is used to create instances of SQL Server instances on Microsoft Azure, and insert data into those databases.

python-programming-for-data-science

Content from the University of British Columbia's Master of Data Science course DSCI 511.

cql-on-omop

Runs CQL phenotype definitions against an OMOP repository

omoponfhir-omopv5-sql

OMOPonFHIR Database SQLRender Implementation

TheBookOfOhdsi

The Book of OHDSI repository

DataQualityDashboard

A tool to help improve data quality standards in observational data science.

drupal

Docker Official Image packaging for Drupal

Phenotype_Data_Acquisition

The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream

Covid19CharacterizationCharybdis

Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographic, clinical characteristics, treatments and outcomes of interest among individuals tested for SARS-CoV-2 and/or diagnosed with COVID-19 compared to Influenza patients from 2017-2018

leaf

Leaf Clinical Data Explorer

DQe-c-v2

Re-engineering the DQe-c Data Quality package

DataQualityDashboard

A tool to help improve data quality standards in observational data science.

CommonDataModel

Definition and DDLs for the OMOP Common Data Model (CDM)

PatientLevelPrediction

An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

fhir-py

FHIR Client for python

fastai

The fastai deep learning library