Paul Lang (paulflang)

paulflang

Geek Repo

Company:Biosim

Home Page:https://www.linkedin.com/in/paulflang/

Twitter:@PF_Lang

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Organizations
SciML

Paul Lang's starred repositories

Pluto.jl

🎈 Simple reactive notebooks for Julia

Language:JavaScriptLicense:MITStargazers:4914Issues:36Issues:1609

ModelingToolkit.jl

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations

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Symbolics.jl

Symbolic programming for the next generation of numerical software

Language:JuliaLicense:NOASSERTIONStargazers:1325Issues:22Issues:666

CellProfiler

An open-source application for biological image analysis

Language:PythonLicense:NOASSERTIONStargazers:882Issues:44Issues:3265

SymbolicUtils.jl

Symbolic expressions, rewriting and simplification

Language:JuliaLicense:NOASSERTIONStargazers:526Issues:18Issues:260

Catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Language:JuliaLicense:NOASSERTIONStargazers:440Issues:17Issues:336

citation-file-format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

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pyPESTO

python Parameter EStimation TOolbox

Language:PythonLicense:BSD-3-ClauseStargazers:207Issues:10Issues:510

PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

SBML.jl

Julia interface to the Systems Biology Markup Language (SBML) library

Language:JuliaLicense:Apache-2.0Stargazers:28Issues:9Issues:69

PEtab.jl

Create parameter estimation problems for ODE models

Language:JuliaLicense:MITStargazers:26Issues:2Issues:38

parPE

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

Language:C++License:MITStargazers:19Issues:7Issues:200

wc_rules

Rule-based modeling for whole-cell models.

Language:PythonLicense:MITStargazers:9Issues:6Issues:7
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