paulbrodersen

netgraph

Publication-quality network visualisations in python

entropy_estimators

Estimators for the entropy and other information theoretic quantities of continuous distributions

inverse_distance_weighting

Interpolation in D-dimensional spaces using inverse distance weighted, k-nearest neighbours

matplotlib_venn_wordcloud

Venn diagrams with word clouds

entropy_based_binning

Entropy based binning of discrete variables.

somnotate

Automated polysomnography for experimental animal research

network_line_graph

Visualisation to compare different states of a network

slicereg

Registration of 2D sections to a 3D volume

matplotlib_set_diagrams

Draw Euler diagrams and Venn diagrams with Matplotlib.

brainglobe.github.io

brainglobe.info website

BrainRender

a python based software for visualization of neuroanatomical and morphological data.

cgat-core

Core functionality of the CGAT code

coronal_hemisphere_annotation_tool

DeepSlice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

grandalf

graph and drawing algorithms framework

hola

Human-like Orthogonal Layout Algorithm

initium_map

lspopt

Python implementation of a multitaper window method for estimating Wigner spectra for certain locally stationary processes

matplotlib-venn

Area-weighted venn-diagrams for Python/matplotlib

networkx

Network Analysis in Python

neuronab

A python module that automatically isolates neurites and potential synapses on immunofluorescence images.

nutil

https://nutil.readthedocs.io/en/latest/

patchseq

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

rbm_variants

Restricted Boltzmann machine variants

sleepy-python

Automated vigilance state scoring based on LFP or EEG data

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

The-Python-Graph-Gallery

A website displaying hundreds of charts made with Python

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

visbrain

A multi-purpose GPU-accelerated open-source suite for brain data visualization