Paul Barber's repositories
msaWrapper
This package unifies the exploration and use of multivariate survival analysis methods for time to event and ordinal class data.
CytoPb
For multiplexed imaging (IF, IMC, ...), use of overlap signals to generate cell type maps and interaction signatures.
horse_game
Horse Race Betting Game in Python 3
genefu
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
imagej.github.io
GitHub Pages for ImageJ
ImcSegmentationPipeline
A pixelclassification based multiplexed image segmentation pipeline
jooh.github.io
website
Marker_Distribution
“Novel Marker Distribution Pipeline for Analysis of Cell Based Quantitative Spatial Information”. The aim of this research was to analyse quantitative spatial information and provide intuitive visualisation relating to the identification of cells relative to tissue structure and pathology such as cancer tumour.
COINPaperFigures
R Code used to generate the figures for the COIN paper (2019)
imctools
Tools to handle IMC data
ImcPluginsCP
CellProfiler plugins for multiplexed image analysis
CanaryCareDataAnalysis
Some R code to analyse data from a Canary Care home monitoring system
libicsR
Use of the libics library from R.
image-segmentation-keras
Implementation of Segnet, FCN, UNet and other models in Keras.
FLIM-CUDA-Primatives
Operations on fluorescence lifetime imaging (FLIM) data performed on a GPU using CUDA.
libics
Image Cytometry Standard file reading and writing.
ATtiny85_RaspberryPi
Code for the ATtiny85 and for programming via the Raspberry Pi
raspi-gpio
Py scripts from my Raspberry Pi to do stuff via the GPIO