This repository contains an R package with methods used in ``Detection of multiple perturbations in multi-omics biological networks'' (Griffin, Johnson, & Kolaczyk; under revision). Functions are provided for multi-attribute network estimation and perturbation detection under a joint Gaussian graphical model. To use this package, install the devtools package from CRAN and run:
library(devtools)
install_github('paulajgriffin/mapggm')
For the simulation pipeline files and TCGA data used in this paper, please see https://github.com/paulajgriffin/mapggm_supplemental.