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Patrick T West (patrickwest)

patrickwest

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Patrick T West's repositories

EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

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EukRep_Pipeline

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NCBI_contamination_fix

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PhaVa

Identifying phase variation with long reads

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BART_hourly_ridership

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c_parapsilosis_analysis

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jupyter_basics

example notebooks

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mgx-sim

Utilities for splitting and simulating genomes from metagenomes.

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patrickwest.github.io

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PhaseFinder

A pipeline to computationally identify invertible DNA regions and quantify their orientations.

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pipeCoverage

Quickly calculate coverage of sequences in a .sam file while retaining breadth information

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