pati-ni

dvorak-qwerty

Linux configuration files for Dvorak Keyboard Layouts with Qwerty layout modifier keys

cutadapt

cutadapt removes adapter sequences from sequencing reads

bandcamp-downloader

Downloads tracklist from bandcamp site and assigns metadata to the tracks

concoord

Coordination Service for Distributed Systems

contrib

The OpenMS contrib libraries

coop

Fast covariance, correlation, and cosine similarity.

CRISPR-timeseq

Drop out screen analysis of time sequence data

eliteclinic-scrapper

emacs-config

GNU Emacs configuration files

fftw3

This is the official repository for the FFTW Fourier transform library, version 3.x

geospatial-data

This is a repository that utilizes the C++ STL to build efficient algoritmhs that handle geospatial data

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

kazoo

Kazoo is a high-level Python library that makes it easier to use Apache Zookeeper.

kissfft

mostly a mirror of the original kissfft source by Mark Borgerding.

monocle3

OpenMS

The codebase of the OpenMS project

openreplica-stress

Stress framework for Openreplica

pati-ni.github.io

GSoC '17 blog

SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scfind

scfind-shiny

scRNA-seq_silk_organoids

This repo holds the code for the paper "Single cell transcriptomics captures features of developing and mature DA neurons in human brain organoids and reveals more precise and reproducible patterning in silk-bioengineered culture"

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group

scRNASeqPipeline

SPRING_dev

statannot

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

zookeeper-benchmark

Our benchmarking tool for ZooKeeper

zookeeper-stress

Testing framework for stressing Apache zookeeper write performance