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Pathway (PathwayinGithub)

PathwayinGithub

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Company:Institute of Neuroscience, CAS

Location:Shanghai

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Pathway's starred repositories

Autoencoders

Implementation of simple autoencoders networks with Keras

Language:Jupyter NotebookLicense:MITStargazers:236Issues:0Issues:0

SGLXMetaToCoords

Code to create geometry files for sorting from SpikeGLX metadata

Language:PythonStargazers:5Issues:0Issues:0

GenLouvain

A generalized Louvain method for community detection implemented in MATLAB

Language:MATLABLicense:NOASSERTIONStargazers:99Issues:0Issues:0

dPCA

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

Language:Jupyter NotebookLicense:MITStargazers:278Issues:0Issues:0

ssm

Bayesian learning and inference for state space models

Language:Jupyter NotebookLicense:MITStargazers:560Issues:0Issues:0

Neuroscience-Information-Theory-Toolbox

A MATLAB toolbox for performing information theory analyses of neuroscience data

Language:MatlabStargazers:68Issues:0Issues:0

similarity_index_of_label_graph

This is the package used to calculate the similarity index of the label graph pairs.

Language:PythonLicense:AGPL-3.0Stargazers:13Issues:0Issues:0

CellExplorer

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Language:MATLABLicense:BSD-3-ClauseStargazers:96Issues:0Issues:0

spikes

cortex lab code for electrophysiology

Language:MATLABStargazers:72Issues:0Issues:0

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Language:PythonLicense:LGPL-3.0Stargazers:4597Issues:0Issues:0

modular_network

Code for paper 'Multi-regional module-based signal transmission in mouse visual cortex'

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:3Issues:0Issues:0

phylib

Lightweight electrophysiological data analysis library

Language:PythonLicense:BSD-3-ClauseStargazers:11Issues:0Issues:0

seqNMF

An algorithm for unsupervised discovery of sequential structure

Language:MATLABLicense:MITStargazers:159Issues:0Issues:0

KiloSort

GPU code for spike sorting

Language:MATLABLicense:GPL-2.0Stargazers:176Issues:0Issues:0

CatGT

SpikeGLX postprocessing [tshift filter CAR fix join extract]

Language:C++Stargazers:9Issues:0Issues:0

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

Language:PythonLicense:NOASSERTIONStargazers:53Issues:0Issues:0

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

Language:PythonLicense:NOASSERTIONStargazers:107Issues:0Issues:0

spike-raster-plot

A spike raster plot from spike time stamps with optional trial and group data.

Language:MATLABLicense:NOASSERTIONStargazers:10Issues:0Issues:0

lasagna

3-D imaging visualisation through slicing

Language:PythonLicense:GPL-3.0Stargazers:28Issues:0Issues:0

Pupil_Size_Analysis

Automatic extraction of pupil size from videos

Language:MATLABStargazers:1Issues:0Issues:0

Liulab2022_NN

opensource analysis data

Language:MATLABStargazers:1Issues:0Issues:0

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

Language:PythonLicense:GPL-3.0Stargazers:154Issues:0Issues:0

NeuropixelsRegistration

Motion estimation and registration of Neuropixels data

Language:Jupyter NotebookLicense:MITStargazers:14Issues:0Issues:0

mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

Language:PythonLicense:BSD-3-ClauseStargazers:32Issues:0Issues:0

iblapps

pyqt5 dependent applications for IBL sessions

Language:PythonLicense:MITStargazers:24Issues:0Issues:0

AP_histology

Histology processing

Language:MATLABStargazers:62Issues:0Issues:0

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

Language:PythonLicense:BSD-3-ClauseStargazers:317Issues:0Issues:0

neuropixels_trajectory_explorer

Neuropixels trajectory explorer with the Allen CCF mouse atlas

Language:MATLABLicense:GPL-3.0Stargazers:66Issues:0Issues:0

Kilosort

Fast spike sorting with drift correction for up to a thousand channels

Language:PythonLicense:GPL-3.0Stargazers:466Issues:0Issues:0

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

Language:PythonLicense:MITStargazers:517Issues:0Issues:0