Python package for brain decoding analysis
- Python 2.7, 3.6, or later
- numpy
- scipy
- scikit-learn
- h5py
dataform
module- hdf5storage
- pandas
dl.caffe
module- Caffe
- PIL
- tqdm
dl.torch
module- PyTorch
- PIL
fig
module- matplotlib
- PIL
mri
module- nipy
- nibabel
- pandas
$ pip install bdpy
If the installation failed with Python 3, please try below.
$ pip install git+https://github.com/KamitaniLab/bdpy.git
- bdata: BdPy data format (BData) core package
- dataform: Utilities for various data format
- distcomp: Distributed computation utilities
- dl: Deep learning utilities
- feature: Utilities for DNN features
- fig: Utilities for figure creation
- ml: Machine learning utilities
- mri: MRI utilities
- opendata: Open data utilities
- preproc: Utilities for preprocessing
- stats: Utilities for statistics
- util: Miscellaneous utilities
BdPy data format (or BrainDecoderToolbox2 data format; BData) consists of two variables: dataset and metadata. dataset stores brain activity data (e.g., voxel signal value for fMRI data), target variables (e.g., ID of stimuli for vision experiments), and additional information specifying experimental design (e.g., run and block numbers for fMRI experiments). Each row corresponds to a single 'sample', and each column representes either single feature (voxel), target, or experiment design information. metadata contains data describing meta-information for each column in dataset.
See BData API examples for useage of BData.
- Shuntaro C. Aoki (Kyoto Univ)