passt / miceandmen

Source code related to Stumpf et al. (2020) Transfer learning from mouse to man.

Transfer learning from mouse to man

This repository contains code related to:

Stumpf et al. Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing (2020).

Additional data

Due to storage constraints, trained models and processed data used in this repository are archived on Mendeley data*:

• http://dx.doi.org/10.17632/csvm3kpkxd.1.

*download these files and unzip to the project folder when cloning the repository.

Original scRNAseq data is available from ArrayExpress:

• https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8629/
• https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8630/

References

Pre-print: Stumpf et al. (2019) Mapping biology from mouse to man using transfer learning:

• https://doi.org/10.1101/2019.12.26.888842

passt. (2020, October 19). passt/miceandmen: Code released with manuscript. (Version v1.0). Zenodo.